CompuCell 3DWelcome to the new CompuCell 3D Website. The old site is still available.
***Latest News***
CompuCell3D 3.6.1 released:
This version, besides numerous bug-fixes allows users to save complete snapshot of the simulation and use it as a restart file. please go to the download page to get the latest CC3D version
New CompuCell Simulations have been published:
A Multi-cell, Multi-scale Model of Vertebrate Segmentation and Somite Formation (Movie)
Computer Simulations of Cell Sorting Due to Differential Adhesion
*** Introducing Twedit++-CC3D - the fastest way of configuring your CompuCell3D simulations***
Twedit++ with CompuCell3D plugins allows users to autogenerate working simulation code within seconds. Users have to specify which cellular behaviors they are interested in modeling and the rest is done automatically.
Additional Twedit++ features such ascode completion or code assistant (CC3D Python menu) make writing simulation code much easier than before. To try new Twedit++-CC3D please download latest CompuCell3D
*** 5th User Training Workshop - August 8th-19th, 2011***
We are pleased to announce our 5th User Training Workshop (covering CompuCell3D and SBW). For details please see: Workshop11
Please note the registration deadline is June 1st 2011.
CellDraw released
We have released CellDraw, an editing and conversion software tool for PIFF files, to graphically prepare the initial cell layout in simulations. It is included in the CC3D binary distribution for Windows (CC3D 3.5.0 or newer) and Mac OS X (CC3D 3.6.0 or newer). Linux version coming soon.
CompuCell3D Tutorial - Lorentz Center, Leiden, Netherlands, October 2010
Parallel version of CompuCell3D
We have released parallel version of CompuCell3D (3.5.0) which can take advantage of multiprocessor machines.
Binaries and source code of Version 3.5.0 Released
CompuCell 3D
CompuCell is an open source software modeling environment and pde solver. It is largely used for cellular modeling (foams, tissues, etc.), however, efforts are being made to include fluid simulation capabilities. Created in collaboration between groups at IU and Notre Dame, CompuCell provides an easy user interface for complex cellular modeling. More
Watch a Demo
Integration with SBW
We have conducted a preliminary integration of CompuCell3D with
Systems Biology Workbench(SBW) to link to subcellular models. As a result users can select the level of detail in their models while working within a single integrated framework.
List of Movies (Note: simulator is an ODE solver of metabolic pathways):
Movie 1:109 Cells and one simulator
Movie 2:109 cells and 109 simulators (same initial conditions)
Movie 3:109 cells and 109 simulators (different initial conditions)
Movies created by Frank Bergmann
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